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1.
Eur J Pharm Sci ; 172: 106157, 2022 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-35257876

RESUMO

BACKGROUND AND PURPOSE: Despite being a first-line clinical drug, thienopyridines have many unsatisfactory aspects, including the low bioavailability of clopidogrel(CLP) and the high bleeding risk of prasugrel. We synthesized deuterium clopidogrel(D-CL, patented in China) to alleviate the deficiency of CLP in clinical, such as a slow onset, a greater influence of gene polymorphism, and a high frequency of drug-drug interaction. EXPERIMENTAL APPROACH: Molecular docking was used to analyze the affinity between D-CL and the P2Y12 receptor. The levels of active metabolites of D-CL were detected using HPLC/MS-MS and the activities of main metabolic enzymes were analyzed; Subsequently, platelet aggregation function, thrombus model were used to evaluate the pharmacodynamics of D-CL. Finally, the safety of D-CL were evaluated through examination of blood routine, PT, APTT, bleeding time, serological tests, liver pathological biopsy, liver cell apoptosis and detection of apoptosis-related proteins. KEY RESULTS: The introduction of deuterium made the binding of CLP to P2Y12 receptor more stable, improved the concentration of active metabolites, and substantially reduced the inhibition of major metabolic enzymes, including CYP2B6, CYP2C9, and CYP2C19, thereby, exerting better antiplatelet effects without increasing the risk of bleeding, along with a concomitant decrease in the apoptosis of hepatocytes.


Assuntos
Hidrogênio , Inibidores da Agregação Plaquetária , Clopidogrel/farmacologia , Deutério/farmacologia , Ésteres do Ácido Fórmico , Hidrogênio/farmacologia , Simulação de Acoplamento Molecular , Agregação Plaquetária , Inibidores da Agregação Plaquetária/farmacologia , Tiofenos/farmacologia
2.
J Chromatogr A ; 1656: 462547, 2021 Oct 25.
Artigo em Inglês | MEDLINE | ID: mdl-34551321

RESUMO

Numerous industrial organic pollutants such as aromates, alkoxyalcohols, other organic solvents and monomers are absorbed, metabolized, and finally excreted in urine mostly as carboxylic acids that are determined as biomarkers of exposure. For a number of these xenometabolites, biological limits (levels of biomarkers in biological material) have been established to prevent damage to human health. Till now, most of the analytical procedures used have been optimized for one or a few analytes. Here, we report a more comprehensive approach enabling rapid GC-MS screening of sixteen acidic biomarkers in urine that are metabolized in the human body from several important industrial chemicals; benzene, toluene, styrene, xylenes, alkoxyalcohols, carbon disulfide, furfural and N,N-dimethylformamide. The new method involves immediate in situ derivatization - liquid liquid microextraction of urine by an ethyl chloroformate-ethanol-chloroform-pyridine medium and GC-MS analysis of the derivatized analytes in the lower organic phase. The xenometabolite set represents diverse chemical structures and some of hippuric and mercapturic acids also provided unusual derivatives that were unambiguously elucidated by means of new ethyl chloroformates labeled with stable isotopes and by synthesis of the missing reference standards. In the next step, an automated routine was developed for GC-MS/MS analysis using a MetaboAuto® sample preparation workstation and the new method was validated for fourteen metabolites over the relevant concentration range of each analyte in the spiked pooled human urine. It shows good linearity (R2 ≥ 0.982), accuracy (from 85% to 120%), precision (from 0.7% to 20%) and recovery (from 89% to 120%). The method performance was further successfully proved by GC-MS/MS analysis of the certified IP45 and RM6009 reference urines. Moreover, we show that the new method opens up the possibility for biomonitoring of combined and cumulative occupational exposures as well as for urinary metabolite profiling of persons exposed to harmful industrial chemicals.


Assuntos
Exposição Ocupacional , Espectrometria de Massas em Tandem , Monitoramento Biológico , Biomarcadores , Ésteres do Ácido Fórmico , Cromatografia Gasosa-Espectrometria de Massas , Humanos , Exposição Ocupacional/análise
3.
Acta toxicol. argent ; 29(1): 8-10, abr. 2021. graf
Artigo em Espanhol | LILACS | ID: biblio-1360066

RESUMO

Resumen Se describe un caso de quemadura causada por cloroformiato de etilo en ocasión de la respuesta a un incidente que requirió el trasvase del producto desde contenedores defectuosos a otros seguros. La investigación del evento puso en evidenciala necesidad de mantener un protocolo de registro de materiales que ingresan a la zona caliente, que debe ser tenido en cuentaal momento del retiro de los mismos, procediendo a su correcta descontaminación bajo la fiscalización del oficial de seguridad.


Abstract A burn by Ethyl chloroformate in occasion of response to a chemical emergency which required to transfer products from defective containers to safe containers is described. The investigation of the event highlighted the need to maintain aprotocol for the registration of materials to be entered in the hot zone, which must be considered al the moment of remove andproceeding to the proper decontamination under the supervision of the security officer.


Assuntos
Humanos , Masculino , Pessoa de Meia-Idade , Queimaduras Químicas/prevenção & controle , Vazamento de Resíduos Químicos , Ésteres do Ácido Fórmico , Acidentes com Materiais Perigosos , Queimaduras Químicas/diagnóstico , Nádegas , Acidentes de Trabalho/prevenção & controle , Descontaminação , Resíduos Corrosivos
4.
Anal Biochem ; 597: 113688, 2020 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-32194075

RESUMO

Glutaric acid is a precursor of a plasticizer that can be used for the production of polyester amides, ester plasticizer, corrosion inhibitor, and others. Glutaric acid can be produced either via bioconversion or chemical synthesis, and some metabolites and intermediates are produced during the reaction. To ensure reaction efficiency, the substrates, intermediates, and products, especially in the bioconversion system, should be closely monitored. Until now, high performance liquid chromatography (HPLC) has generally been used to analyze the glutaric acid-related metabolites, although it demands separate time-consuming derivatization and non-derivatization analyses. To substitute for this unreasonable analytical method, we applied herein a gas chromatography - mass spectrometry (GC-MS) method with ethyl chloroformate (ECF) derivatization to simultaneously monitor the major metabolites. We determined the suitability of GC-MS analysis using defined concentrations of six metabolites (l-lysine, cadaverine, 5-aminovaleric acid, 2-oxoglutaric acid, glutamate, and glutaric acid) and their mass chromatograms, regression equations, regression coefficient values (R2), dynamic ranges (mM), and retention times (RT). This method successfully monitored the production process in complex fermentation broth.


Assuntos
Ésteres do Ácido Fórmico/metabolismo , Glutaratos/metabolismo , Lisina/metabolismo , Cromatografia Líquida de Alta Pressão , Fermentação , Ésteres do Ácido Fórmico/química , Cromatografia Gasosa-Espectrometria de Massas , Glutaratos/química , Lisina/química , Estrutura Molecular
5.
Molecules ; 25(4)2020 Feb 21.
Artigo em Inglês | MEDLINE | ID: mdl-32098283

RESUMO

Periodic Mesoporous Organosilica Nanoparticles (PMONPs) are nanoparticles of high interest for nanomedicine applications. These nanoparticles are not composed of silica (SiO2). They belong to hybrid organic-inorganic systems. We considered using these nanoparticles for CO2 release as a contrast agent for High Intensity Focused Ultrasounds (HIFU). Three molecules (P1-P3) possessing two to four triethoxysilyl groups were synthesized through click chemistry. These molecules possess a tert-butoxycarbonyl (BOC) group whose cleavage in water at 90-100 °C releases CO2. Bis(triethoxysilyl)ethylene E was mixed with the molecules Pn (or not for P3) at a proportion of 90/10 to 75/25, and the polymerization triggered by the sol-gel procedure led to PMONPs. PMONPs were characterized by different techniques, and nanorods of 200-300 nm were obtained. These nanorods were porous at a proportion of 90/10, but non-porous at 75/25. Alternatively, molecules P3 alone led to mesoporous nanoparticles of 100 nm diameter. The BOC group was stable, but it was cleaved at pH 1 in boiling water. Molecules possessing a BOC group were successfully used for the preparation of nanoparticles for CO2 release. The BOC group was stable and we did not observe release of CO2 under HIFU at lysosomal pH of 5.5. The pH needed to be adjusted to 1 in boiling water to cleave the BOC group. Nevertheless, the concept is interesting for HIFU theranostic agents.


Assuntos
Nanomedicina , Nanopartículas/química , Compostos de Organossilício/química , Dióxido de Silício/química , Dióxido de Carbono/química , Química Click , Meios de Contraste/química , Portadores de Fármacos/química , Ésteres do Ácido Fórmico/química , Humanos , Nanopartículas/uso terapêutico , Nanotubos/química , Compostos de Organossilício/uso terapêutico , Porosidade , Dióxido de Silício/uso terapêutico
6.
Sci Rep ; 9(1): 14605, 2019 10 10.
Artigo em Inglês | MEDLINE | ID: mdl-31601880

RESUMO

Infestation of phosphine (PH3) resistant insects threatens global grain reserves. PH3 fumigation controls rice weevil (Sitophilus oryzae) but not highly resistant insect pests. Here, we investigated naturally occurring strains of S. oryzae that were moderately resistant (MR), strongly resistant (SR), or susceptible (wild-type; WT) to PH3 using global proteome analysis and mitochondrial DNA sequencing. Both PH3 resistant (PH3-R) strains exhibited higher susceptibility to ethyl formate-mediated inhibition of cytochrome c oxidase than the WT strain, whereas the disinfectant PH3 concentration time of the SR strain was much longer than that of the MR strain. Unlike the MR strain, which showed altered expression levels of genes encoding metabolic enzymes involved in catabolic pathways that minimize metabolic burden, the SR strain showed changes in the mitochondrial respiratory chain. Our results suggest that the acquisition of strong PH3 resistance necessitates the avoidance of oxidative phosphorylation through the accumulation of a few non-synonymous mutations in mitochondrial genes encoding complex I subunits as well as nuclear genes encoding dihydrolipoamide dehydrogenase, concomitant with metabolic reprogramming, a recognized hallmark of cancer metabolism. Taken together, our data suggest that reprogrammed metabolism represents a survival strategy of SR insect pests for the compensation of minimized energy transduction under anoxic conditions. Therefore, understanding the resistance mechanism of PH3-R strains will support the development of new strategies to control insect pests.


Assuntos
Complexo IV da Cadeia de Transporte de Elétrons/metabolismo , Resistência a Inseticidas , Inseticidas , Fosfinas , Gorgulhos/genética , Animais , DNA Mitocondrial/genética , Complexo IV da Cadeia de Transporte de Elétrons/antagonistas & inibidores , Metabolismo Energético , Ésteres do Ácido Fórmico , Mitocôndrias/metabolismo , Mutação , Oxirredução , Polimorfismo de Nucleotídeo Único , Proteoma , Proteômica , Análise de Regressão , Espectrometria de Massas por Ionização por Electrospray , Espectrometria de Massas em Tandem , Gorgulhos/enzimologia
7.
Environ Sci Pollut Res Int ; 26(31): 32209-32223, 2019 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-31494857

RESUMO

CO2 and H2S removal from flue gases is indispensable to be done for protection of environment with respect to global warming as well as clean air. Chemical absorption is one of the most developed and capable techniques for the removal of these sour gases. Among the many solvents, ionic liquids (ILs) are more capable due to their desirable green solvent properties. However, ILs being usually costlier, the blends of ILs and amines are more suggestive for absorption. In the present work, various essential characterization properties such as density, viscosity, sound velocity, and refractive index of two ionic liquid-amine blend systems viz. (1) 2-Hydroxy ethyl ammonium formate (HEF) + 1-(2-aminoethyl) piperazine (AEP) and (2) 2-Hydroxy ethyl ammonium formate (HEF) + 2-Amino-2-methyl-1-propanol (AMP) are reported. The temperature range for which all the measurements were conducted is 298.15 to 333.15 K. For both systems of (HEF + AEP) and (HEF + AMP), HEF mass fractions were varied from 0.2 to 0.8.The density and viscosity results were correlated as a function of temperature and concentration of ionic liquid and amine with Redlich-Kister and Grunberg-Nissan models, respectively. Moreover, feed forward neural network model (ANN) is explored for correlating experimentally determined sound velocity and refractive index data. The measured properties are further analyzed to estimate various thermodynamic as well as transport properties such as diffusivity of CO2/H2S in the (HEF + AEP) and (HEF + AMP), thermal expansion coefficients, and isentropic compressibility, ΔG0, ΔS0, ΔH0, using the available models in the literature.


Assuntos
Monofosfato de Adenosina/análise , Compostos de Amônio/química , Dióxido de Carbono/química , Líquidos Iônicos/química , Íons/química , Acústica , Monofosfato de Adenosina/química , Aminas , Ésteres do Ácido Fórmico/química , Temperatura Alta , Reologia , Solventes/química , Temperatura , Termodinâmica , Viscosidade
8.
Artigo em Inglês | MEDLINE | ID: mdl-29778872

RESUMO

Lactic acid represents an important metabolite that reflects mitochondria function and may further serve as energy source for cancer cells. In light of this physiological and pathological significance, we developed a novel and sensitive gas chromatography method to detect lactic acid in cell culture media. Here, ethyl chloroformate was selected as derivative reagent and the derivatization process was further optimized in terms of number of reagents and reaction time as well as extraction reagents. Under optimal conditions, good linearity was achieved in the tested calibration range. The limit of detection (LOD) was determined to be 0.67 µmol/L, the recovery rates were 99.6%-106% and the precision rate RSD was <5.49%. Furthermore, this method has been applied to quantify the secretion of lactic acid in cells exposed to mono­2­ethylhexyl phthalate at different doses and in cancer cells over time. Taken in concert, our method proved to be both sensitive and reliable and may be applied for studies on mitochondrial function and cell glycolysis conditions.


Assuntos
Cromatografia Gasosa-Espectrometria de Massas/métodos , Glucose/metabolismo , Ácido Láctico/análise , Linhagem Celular Tumoral , Técnicas Citológicas , Ésteres do Ácido Fórmico , Humanos , Ácido Láctico/metabolismo , Limite de Detecção , Modelos Lineares , Neoplasias/metabolismo , Reprodutibilidade dos Testes
9.
Artigo em Inglês | MEDLINE | ID: mdl-29100759

RESUMO

A simple "one-pot" derivatization and liquid-liquid extraction (LLE) procedure was developed for GC-MS analysis of reduced glutathione (GSH) analysis in erythrocytes. The metabolite was extracted by 5% (w/v) TCA, the supernatant treated with ECF and ethanol-pyridine media, the derivative separated and detected by gas chromatography-mass spectrometry using a short non-polar capillary GC column at a high column-head pressure. Total analysis time was 11min. The process was optimized by a Design of Experiment. The method was validated showing a good linearity over the 25.4-813.4µM concentration range, providing satisfactory results in terms of intra-day and inter-day precision as well as an optimal accuracy. The new method was evaluated in a pilot study involving patients with severe protein malnutrition. Comparison of this group with a group of healthy subjects revealed significantly lower GSH concentrations in erythrocytes in the former, thus proving that the described GC-MS method could be employed for fast and simple GSH analysis in clinical studies.


Assuntos
Eritrócitos/química , Ésteres do Ácido Fórmico/química , Cromatografia Gasosa-Espectrometria de Massas/métodos , Glutationa/sangue , Glutationa/isolamento & purificação , Extração Líquido-Líquido/métodos , Glutationa/química , Humanos , Limite de Detecção , Modelos Lineares , Projetos Piloto , Reprodutibilidade dos Testes
10.
Water Sci Technol ; 76(7-8): 1884-1894, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28991803

RESUMO

A novel thin film composite (TFC) polyamide reverse osmosis membrane was prepared via the interfacial polymerization of m-phenylene diamine (MPD) in aqueous phase and 1,3,5-trimesoyl chloride (TMC) in organic phase on a polysulfone ultrafiltration support by assisting with ethyl formate as a co-solvent added in the organic phase. The ethyl formate added in the organic phase is intended to form a narrow miscibility zone, which leads to the thicker reaction zone. The multi-layered loose polyamide structure with larger pore size was formed due to the thicker reaction zone and lower content of MPD. The enhanced hydrophilicity of the membrane was proved by the decreased water contact angle. Water flux was measured at 1.6 MPa with 2,000 ppm NaCl aqueous solution. Compared to the TFC membrane prepared without ethyl formate, the water flux across the TFC membrane with ethyl formate in the organic phase increased with the increased ethyl formate content (from 23 to 45 L/(m2 h)) and the salt rejection remained at a high level (>90%). The ethyl formate can be used as a co-solvent to effectively enhance the performance of the TFC membrane.


Assuntos
Ésteres do Ácido Fórmico/química , Membranas Artificiais , Nylons/química , Osmose , Filtração , Interações Hidrofóbicas e Hidrofílicas , Polimerização , Polímeros , Salinidade , Solventes , Sulfonas , Eliminação de Resíduos Líquidos , Água/química
11.
Anal Chem ; 89(10): 5565-5577, 2017 05 16.
Artigo em Inglês | MEDLINE | ID: mdl-28437060

RESUMO

The ability to identify and quantify small molecule metabolites derived from gut microbial-mammalian cometabolism is essential for the understanding of the distinct metabolic functions of the microbiome. To date, analytical protocols that quantitatively measure a complete panel of microbial metabolites in biological samples have not been established but are urgently needed by the microbiome research community. Here, we report an automated high-throughput quantitative method using a gas chromatography/time-of-flight mass spectrometry (GC/TOFMS) platform to simultaneously measure over one hundred microbial metabolites in human serum, urine, feces, and Escherichia coli cell samples within 15 min per sample. A reference library was developed consisting of 145 methyl and ethyl chloroformate (MCF and ECF) derivatized compounds with their mass spectral and retention index information for metabolite identification. These compounds encompass different chemical classes including fatty acids, amino acids, carboxylic acids, hydroxylic acids, and phenolic acids as well as benzoyl and phenyl derivatives, indoles, etc., that are involved in a number of important metabolic pathways. Within an optimized range of concentrations and sample volumes, most derivatives of both reference standards and endogenous metabolites in biological samples exhibited satisfactory linearity (R2 > 0.99), good intrabatch reproducibility, and acceptable stability within 6 days (RSD < 20%). This method was further validated by examination of the analytical variability of 76 paired human serum, urine, and fecal samples as well as quality control samples. Our method involved using high-throughput sample preparation, measurement with automated derivatization, and rapid GC/TOFMS analysis. Both techniques are well suited for microbiome metabolomics studies.


Assuntos
Escherichia coli/metabolismo , Formiatos/química , Ésteres do Ácido Fórmico/química , Cromatografia Gasosa-Espectrometria de Massas/métodos , Metaboloma , Automação , Escherichia coli/química , Fezes/química , Humanos , Análise de Componente Principal , Reprodutibilidade dos Testes , Soro/química , Urina/química
12.
Anal Chem ; 89(9): 4847-4854, 2017 05 02.
Artigo em Inglês | MEDLINE | ID: mdl-28372357

RESUMO

Liquid chromatography coupled with electrospray ionization mass spectrometry (ESI-MS) is routinely used in proteomics research. Mass spectrometry-based peptide analysis is performed de facto in positive-ion mode, except for the analysis of some post-translationally modified peptides (e.g., phosphorylation and glycosylation). Collected mass spectrometry data after peptide negative ionization analysis is scarce, because of a lack of negatively charged amino acid side-chain residues that would enable efficient ionization (i.e., on average, every 10th amino acid residue is negatively charged). Also, several phenomena linked to negative ionization, such as corona discharge, arcing, and electrospray destabilization, because of the presence of polar mobile-phase solutions or acidic mobile-phase additives (e.g., formic or trifluoroacetic acid), reduce its use. Named phenomena influence microflow and nanoflow electrospray ionization (ESI) of peptides in a way that prevents the formation of negatively charged peptide ions. In this work, we have investigated the effects of post-column addition of isopropanol solutions of formaldehyde, 2,2-dimethylpropanal, ethyl methanoate, and 2-phenyl-2-oxoethanal as the negative-ion-mode mobile-phase modifiers for the analysis of peptides. According to the obtained data, all four modifiers exhibited significant enhancement of peptide negative ionization, while ethyl methanoate showed the best results. The proposed mechanism of action of the modifiers includes proton transfer reactions through oxonium ion formation. In this way, mobile phase protons are prevented from interfering with the process of negative ionization. To the best of our knowledge, this is the first study that describes the use and reaction mechanism of aforementioned modifiers for enhancement of peptide negative ionization.


Assuntos
Fragmentos de Peptídeos/análise , Fragmentos de Peptídeos/química , Prótons , Aldeídos/química , Angiotensina II/análise , Angiotensina II/química , Animais , Bovinos , Cromatografia Líquida , Formaldeído/química , Ésteres do Ácido Fórmico/química , Soroalbumina Bovina/análise , Soroalbumina Bovina/química , Espectrometria de Massas por Ionização por Electrospray/métodos
13.
Angew Chem Int Ed Engl ; 55(42): 13174-13179, 2016 10 10.
Artigo em Inglês | MEDLINE | ID: mdl-27654901

RESUMO

We have developed a convenient method for the direct synthesis of peptide thioesters, versatile intermediates for peptide ligation and cyclic peptide synthesis. The technology uses a modified Boc SPPS strategy that avoids the use of anhydrous HF. Boc in situ neutralization protocols are used in combination with Merrifield hydroxymethyl resin and TFA/TMSBr cleavage. Avoiding HF extends the scope of Boc SPPS to post-translational modifications that are compatible with the milder cleavage conditions, demonstrated here with the synthesis of the phosphorylated protein CHK2. Peptide thioesters give easy, direct, access to cyclic peptides, illustrated by the synthesis of cyclorasin, a KRAS inhibitor.


Assuntos
Ésteres/química , Ésteres do Ácido Fórmico/síntese química , Peptídeos/química , Compostos de Sulfidrila/química , Ciclização , Ésteres do Ácido Fórmico/química , Estrutura Molecular
14.
Anal Sci ; 32(2): 141-6, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26860556

RESUMO

An improved GC method in terms of sensitivity and decrease in the analysis time has been developed for the analysis of eight guanidino compounds: guanidine (G), methylguanidine (MG), creatinine (CTN), guanidinoacetic acid (GAA), guanidinobutyric acid (GBA), guanidinopropionic acid (GPA), argenine (Arg), and guanidinosuccinic acid (GSA), using isovaleroylacetone (IVA) and ethyl chloroformate (ECF) as derivatizing reagents. The separation was obtained from column HP-5 (30 m × 0.32 mm i.d.) with film thickness of 0.25 µm within 11 min. The linear calibrations were obtained with 0.5 to 50 µg/mL with coefficient of determination (R(2)) within 0.9969 - 0.9998. Limits of detections (LODs) were within 5 - 140 ng/mL. The derivatization, separation and determination was repeatable (n = 6) with relative standard deviation (RSD) within 1.2 - 3.1%. The guanidino compounds were determined in deproteinized serum of healthy volunteers and uremic patients within below LOD to 8.8 µg/mL and below LOD to 43.99 µg/mL with RSD within 1.4 - 3.6%. The recovery of guanidino compounds calculated by standard addition from serum was within 96.1 - 98.9%, with RSD 1.4 - 3.6%.


Assuntos
Arginina/análise , Ácido Butírico/análise , Cromatografia Gasosa/métodos , Creatinina/análise , Guanidina/análise , Uremia/sangue , Acetona/química , Ácidos Bóricos/química , Butiratos/análise , Calibragem , Ésteres do Ácido Fórmico/química , Glicina/análogos & derivados , Glicina/análise , Guanidinas/análise , Voluntários Saudáveis , Humanos , Concentração de Íons de Hidrogênio , Cetonas/química , Limite de Detecção , Metilguanidina/análise , Propionatos/análise , Valores de Referência , Reprodutibilidade dos Testes , Succinatos/análise
15.
Org Biomol Chem ; 14(7): 2327-46, 2016 Feb 21.
Artigo em Inglês | MEDLINE | ID: mdl-26806113

RESUMO

Bioorthogonal reactions allow the introduction of new functionalities into peptides, proteins, and other biological molecules. The most readily accessible amino acids for bioorthogonal reactions have modest conformational preferences or bases for molecular interactions. Herein we describe the synthesis of 4 novel amino acids containing functional groups for bioorthogonal reactions. (2S,4R)- and (2S,4S)-iodophenyl ethers of hydroxyproline are capable of modification via rapid, specific Suzuki and Sonogashira reactions in water. The synthesis of these amino acids, as Boc-, Fmoc- and free amino acids, was achieved through succinct sequences. These amino acids exhibit well-defined conformational preferences, with the 4S-iodophenyl hydroxyproline crystallographically exhibiting ß-turn (ϕ, ψ∼-80°, 0°) or relatively extended (ϕ, ψ∼-80°, +170°) conformations, while the 4R-diastereomer prefers a more compact conformation (ϕ∼-60°). The aryloxyproline diastereomers present the aryl groups in a highly divergent manner, suggesting their stereospecific use in molecular design, medicinal chemistry, and catalysis. Thus, the 4R- and 4S-iodophenyl hydroxyprolines can be differentially applied in distinct structural contexts. The pentynoate ester of 4R-hydroxyproline introduces an alkyne functional group within an amino acid that prefers compact conformations. The propargyl thioether of 4-thiolphenylalanine was synthesized via copper-mediated cross-coupling reaction of thioacetic acid with protected 4-iodophenylalanine, followed by thiolysis and alkylation. This amino acid combines an alkyne functional group with an aromatic amino acid and the ability to tune aromatic and side chain properties via sulfur oxidation. These amino acids provide novel loci for peptide functionalization, with greater control of conformation possible than with other amino acids containing these functional groups.


Assuntos
Alanina/química , Hidroxiprolina/química , Iodo/química , Peptídeos/síntese química , Fenilacetatos/química , Cristalografia por Raios X , Ésteres do Ácido Fórmico , Hidroxiprolina/síntese química , Espectroscopia de Ressonância Magnética , Conformação Molecular , Peptídeos/química
16.
Bioorg Med Chem Lett ; 26(1): 154-9, 2016 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-26611919

RESUMO

Conditions for the metathesis of alkenes in the convergent synthesis of HDAC inhibitors have been improved by continuous catalyst flow injection in the reaction media. Intermediate and target compounds obtained were tested for their ability to induce HDAC inhibition and tubulin acetylation, revealing the key role of the tert-butyloxycarbonyl (BOC) group for more HDAC6 selectivity. Molecular modelling added rationale for this BOC effect.


Assuntos
Alcenos/química , Benzamidas/química , Ésteres do Ácido Fórmico/química , Inibidores de Histona Desacetilases/química , Inibidores de Histona Desacetilases/farmacologia , Histona Desacetilases/metabolismo , Ácidos Hidroxâmicos/química , Relação Dose-Resposta a Droga , Humanos , Modelos Moleculares , Estrutura Molecular , Relação Estrutura-Atividade
17.
J Phys Chem B ; 118(31): 9199-208, 2014 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-25014395

RESUMO

The self-association behavior of a newly characterized ß-strand-mimic, presented by an achiral nonproteinogenic model system Boc-γ-Abz-NHMe (1: Boc = tert-butyloxycarbonyl; γ-Abz = γ-aminobenzoic acid; NHMe = N-methylamide), have been investigated using (1)H NMR and FT-IR absorption spectroscopy, in combination with computational ab initio calculations. The concentration dependence of (1)H NMR chemical shifts of the amide-NHs in CDCl3 exhibited noncooperative behavior of self-association, whereas the variable temperature (1)H NMR chemical shifts data of the amide-NHs, i.e., temperature-coefficient (Δδ/ΔT) values, could be accounted for by significant enhancement of self-association, i.e., aggregates higher than dimers. In the absence of N-H···O intramolecular H-bond in 1, the intense FT-IR absorption bands in informative amide-A region, i.e., N-H stretches at ∼3465 and 3438 cm(-1) in chloroform solution, could be interpreted in terms of intermolecular H-bonding. The ab initio quantum mechanical calculations performed on two discrete isolated antiparallel H-bonded duplexes with a face-to-face and an edge-to-edge aromatic-aromatic interaction provided strong support for their relative importance to stabilize favorable dimeric structures. The thermodynamic parameters deduced from van't Hoff plots, constructed from variable temperature (1)H NMR data of the amide-NHs in CDCl3, also substantiated the effectiveness of aromatic-aromatic interactions for dimer formation and higher-order self-association. In view of the enormous structural importance of ß-strand-like building blocks in peptide design, we highlight intrinsic self-associating potentials of the readily available γ-Abz moiety, besides the fact that such planar secondary structural mimics are presumed to offer greater prospective for constructing peptidomimetics and therapeutically relevant small molecules.


Assuntos
Aminobenzoatos/química , Ésteres do Ácido Fórmico/química , Peptídeos/química , Estrutura Secundária de Proteína , Solventes/química , Algoritmos , Clorofórmio/química , Simulação por Computador , Ligação de Hidrogênio , Modelos Moleculares , Estrutura Molecular , Espectroscopia de Prótons por Ressonância Magnética , Teoria Quântica , Espectroscopia de Infravermelho com Transformada de Fourier , Temperatura , Termodinâmica
18.
Chemosphere ; 111: 61-9, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24997901

RESUMO

The hydroxylation reactions of ethyl vinyl ether (EVE) in the present of O2 and NO are analyzed by using MPWB1K/6-311++G(3df,2p)//MPWB1K/6-31+G(d,p) level of theory. According to the calculated thermodynamic data, the detailed reaction mechanisms of EVE and OH are proposed. All of the ten possible reaction pathways are discussed. The major products of the title reaction are ethyl formate and formaldehyde, which is in accordance with experimental detection. The rate constants of the primary reactions over the temperature of 250-400K and the pressure range of 100-2000Torr are computed by employing MESMER program. At 298K and 760Torr, OH-addition channels are predominate and the total rate constant is ktot=4.53×10(-11)cm(3)molecule(-1)s(-1). The Arrhenius equation is obtained as ktot=6.27×10(-12)exp(611.5/T), according to the rate constants given at different temperatures. Finally, the atmospheric half life of EVE with respect to OH is estimated to be 2.13h.


Assuntos
Atmosfera/química , Etil-Éteres/química , Hidróxidos/química , Modelos Teóricos , Etil-Éteres/metabolismo , Formaldeído/química , Ésteres do Ácido Fórmico/química , Meia-Vida , Cinética , Oxirredução , Teoria Quântica , Temperatura , Termodinâmica
19.
Methods Mol Biol ; 1047: 65-80, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23943478

RESUMO

The use of the tert-butyloxycarbonyl (Boc) as the Nα-amino protecting group in peptide synthesis can be advantageous in several cases, such as synthesis of hydrophobic peptides and peptides containing ester and thioester moieties. The primary challenge of using Boc SPPS is the need for treatment of the resin-bound peptide with hazardous hydrogen fluoride (HF), which requires special equipment.


Assuntos
Aminoácidos/química , Ésteres do Ácido Fórmico/química , Peptídeos/síntese química , Técnicas de Síntese em Fase Sólida/métodos
20.
J Chromatogr A ; 1291: 10-8, 2013 May 24.
Artigo em Inglês | MEDLINE | ID: mdl-23602642

RESUMO

A rapid and economical method for the simultaneous determination of 20 amino acids in complex biological and food matrices (hair, urine and soybean seed samples) has been developed using ultrasound assisted dispersive liquid-liquid micro extraction (UA-DLLME). The method involves simultaneous derivatization and extraction followed by gas chromatography-mass spectrometric (GC-MS) analysis of amino acids. The parameters of UA-DLLME were optimized with the aid of design of experiments approach. The procedure involves the rapid injection of mixture of acetonitrile (disperser solvent), trichloroethylene (TCE) (extraction solvent) and ethylchloroformate (derivatization reagent) into the aqueous phase of sample extract containing pyridine. The Plackett-Burman design has indicated that, the factors such as volume of disperser and extraction solvents and pH were found to be significantly affects the extraction efficiency of the method. The optimum conditions of these factors based on central composite design were found to be 250µL of acetonitrile, 80µL of TCE and pH of 10. The limit of detection and limit of quantification were found to be in the range of 0.36-3.68µgL(-1) and 1.26-12.01µgL(-1) respectively. This is the first application of DLLME for the analysis of amino acids in any matrices. The advantages like (i) in situ derivatization and extraction of amino acids without any prior lyophilization and cleanup of sample, (ii) low consumption of extraction solvent, (iii) fast and simple, (iv) cost-effective and (iv) good repeatability make the method amenable for the routine analysis of amino acids in clinical, toxicological, nutritional and quality control laboratories.


Assuntos
Aminoácidos/análise , Cromatografia Gasosa-Espectrometria de Massas/métodos , Microextração em Fase Líquida/métodos , Ultrassom/métodos , Acetonitrilas/química , Aminoácidos/química , Aminoácidos/isolamento & purificação , Aminoácidos/urina , Ésteres do Ácido Fórmico/química , Cabelo/química , Humanos , Análise de Regressão , Reprodutibilidade dos Testes , Glycine max/química , Tricloroetileno/química
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